SMTL ID : 3ukr.1

Crystal structure of Bos taurus Arp2/3 complex with bound inhibitor CK-666

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

1 x CKH: 2-fluoro-N-[2-(2-methyl-1H-indol-3-yl)ethyl]benzamide(Non-covalent)

CKH.1: 14 residues within 4Å: Chain A: L.117, N.118, T.119, S.188 Chain B: Y.202, A.203, F.204, D.209, T.212, L.246, P.247, D.248, R.250, I.252 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.202, B:F.204, B:T.212, B:L.246, B:L.246, B:P.247, A:L.117, A:T.119 Hydrogen bonds: B:A.203, B:D.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baggett, A.W. et al., Structural characterization and computer-aided optimization of a small-molecule inhibitor of the Arp2/3 complex, a key regulator of the actin cytoskeleton. Chemmedchem (2012)

Release Date

2013-02-13

Peptides

Actin-related protein 3: A
Actin-related protein 2: B
Actin-related protein 2/3 complex subunit 1B: C
Actin-related protein 2/3 complex subunit 2: D
Actin-related protein 2/3 complex subunit 3: E
Actin-related protein 2/3 complex subunit 4: F
Actin-related protein 2/3 complex subunit 5: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Actin-related protein 3

Actin-related protein 2

Actin-related protein 2/3 complex subunit 1B

Actin-related protein 2/3 complex subunit 2

Actin-related protein 2/3 complex subunit 3

Actin-related protein 2/3 complex subunit 4

Actin-related protein 2/3 complex subunit 5

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