SMTL ID : 3ul8.1

Crystal structure of the TV3 mutant V134L

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 3 residues within 4Å: Chain A: P.10, N.11 Ligands: FUL.3 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: G.123, H.124, N.149 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.149

1 x FUL: beta-L-fucopyranose(Non-covalent)

FUL.3: 3 residues within 4Å: Chain A: F.30 Ligands: NAG-NAG-BMA.1, NAG-NAG-BMA.1 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: H.234, T.235, S.262, K.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.235 Salt bridges: A:H.234, A:K.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, J. et al., Structure-Based Rational Design of a Toll-like Receptor 4 (TLR4) Decoy Receptor with High Binding Affinity for a Target Protein. Plos One (2012)

Release Date

2012-04-04

Peptides

Toll-like receptor 4, Variable lymphocyte receptor B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Toll-like receptor 4, Variable lymphocyte receptor B