SMTL ID : 3umv.2 (1 other biounit)

Eukaryotic Class II CPD photolyase structure reveals a basis for improved UV-tolerance in plants

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 26 residues within 4Å: Chain A: Y.268, L.281, S.282, G.283, L.284, S.285, L.288, F.316, E.319, L.320, R.323, R.324, K.390, G.393, R.396, M.397, A.400, N.421, D.427, G.428, D.430, S.432, G.433, G.436, C.437, S.440 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:R.396, A:A.400 Hydrogen bonds: A:Y.268, A:S.282, A:G.283, A:L.284, A:S.285, A:S.285, A:R.396, A:N.421, A:D.427, A:S.432 Water bridges: A:E.319, A:R.323, A:G.393, A:G.393, A:R.396, A:R.396, A:S.432 Salt bridges: A:K.390 pi-Cation interactions: A:R.396, A:R.396

4 x URE: UREA(Non-functional Binders)

URE.2: 6 residues within 4Å: Chain A: P.278, L.281, E.384, K.390, M.391, H.392 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.278, A:P.278 Water bridges: A:G.393 URE.3: 7 residues within 4Å: Chain A: W.449, K.450, R.452, G.456, I.458, R.459, Y.460 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.450, A:I.458, A:Y.460 Water bridges: A:K.450 URE.4: 6 residues within 4Å: Chain A: F.74, A.75, L.76, F.77, L.82, L.93 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.75, A:F.77 Water bridges: A:Q.48, A:Q.48, A:L.82, A:L.82, A:R.429 URE.5: 5 residues within 4Å: Chain A: F.112, L.113, F.114, P.217, E.218 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.113, A:E.218, A:E.218 Water bridges: A:L.113, A:E.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hitomi, K. et al., Eukaryotic Class II Cyclobutane Pyrimidine Dimer Photolyase Structure Reveals Basis for Improved Ultraviolet Tolerance in Plants. J.Biol.Chem. (2012)

Release Date

2011-12-21

Peptides

Deoxyribodipyrimidine photo-lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Deoxyribodipyrimidine photo-lyase

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