SMTL ID : 3umw.1

Crystal structure of Pim1 kinase in complex with inhibitor (Z)-2-[(1H-indazol-3-yl)methylene]-6-methoxy-7-(piperazin-1-ylmethyl)benzofuran-3(2H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: F.103, I.106, D.143, D.207, G.211, D.212 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.103, A:D.212, A:D.212 Water bridges: A:T.107

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.231, S.233, S.234 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.234, A:S.234 Water bridges: A:R.231, A:R.231, A:R.231, A:E.235, A:E.235 Salt bridges: A:R.231

1 x 596: (2Z)-2-(1H-indazol-3-ylmethylidene)-6-methoxy-7-(piperazin-1-ylmethyl)-1-benzofuran-3(2H)-one(Non-covalent)

596.3: 16 residues within 4Å: Chain A: L.17, G.18, S.19, F.22, V.25, A.38, K.40, I.77, L.93, E.94, R.95, D.101, E.144, L.147, I.158, D.159 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.17, A:F.22, A:L.93, A:R.95, A:L.147, A:I.158 Hydrogen bonds: A:E.94, A:D.101, A:D.101 Water bridges: A:D.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakano, H. et al., Rational evolution of a novel type of potent and selective proviral integration site in Moloney murine leukemia virus kinase 1 (PIM1) inhibitor from a screening-hit compound. J.Med.Chem. (2012)

Release Date

2012-10-03

Peptides

Proto-oncogene serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proto-oncogene serine/threonine-protein kinase pim-1

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