SMTL ID : 3umx.1

Crystal structure of Pim1 kinase in complex with inhibitor (Z)-2-[(1H-indol-3-yl)methylene]-7-(azepan-1-ylmethyl)-6-hydroxybenzofuran-3(2H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x Q18: (2Z)-7-(azepan-1-ylmethyl)-6-hydroxy-2-(1H-indol-3-ylmethylidene)-1-benzofuran-3(2H)-one(Non-covalent)

Q18.1: 13 residues within 4Å: Chain A: L.17, F.22, V.25, A.38, K.40, I.77, L.93, E.94, D.101, E.144, L.147, I.158, D.159 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.17, A:F.22, A:V.25, A:A.38, A:L.93, A:L.147, A:D.159 Hydrogen bonds: A:E.94, A:D.159

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.231, S.233, S.234 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.234, A:S.234 Water bridges: A:R.231, A:R.231 Salt bridges: A:R.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parker, L.J. et al., Flexibility of the P-loop of Pim-1 kinase: observation of a novel conformation induced by interaction with an inhibitor. Acta Crystallogr.,Sect.F (2012)

Release Date

2012-08-08

Peptides

Proto-oncogene serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proto-oncogene serine/threonine-protein kinase pim-1

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