SMTL ID : 3umy.1

Crystal structure of mutant ribosomal protein T217A TthL1 in complex with 80nt 23S RNA from Thermus thermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: S.211, V.212, R.223, I.224 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: G.146, F.147, N.148 Ligand excluded by PLIP

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.52, R.53, S.54 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.52, A:S.54 Water bridges: A:D.55 SO4.9: 1 residues within 4Å: Chain B: G.52 No protein-ligand interaction detected (PLIP) SO4.10: 2 residues within 4Å: Chain B: C.74, C.75 No protein-ligand interaction detected (PLIP) SO4.11: 4 residues within 4Å: Chain B: C.35, C.36, U.46, G.47 No protein-ligand interaction detected (PLIP) SO4.12: 3 residues within 4Å: Chain B: G.27, G.29, G.53 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 7 residues within 4Å: Chain A: E.42, T.215, T.216, A.217 Chain B: G.19, C.71, A.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.42

4 x MG: MAGNESIUM ION(Non-functional Binders)

MG.5: 2 residues within 4Å: Chain B: U.18, G.19 No protein-ligand interaction detected (PLIP) MG.6: 5 residues within 4Å: Chain B: C.24, C.25, G.56, A.69, C.70 No protein-ligand interaction detected (PLIP) MG.7: 3 residues within 4Å: Chain B: G.51, G.52, G.53 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Chain B: G.21 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tishchenko, S.V. et al., Crystal structure of mutant ribosomal protein T217A TthL1 in complex with 80nt 23S RNA from Thermus thermophilus. To be Published

Release Date

2012-10-31

Peptides

50S ribosomal protein L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

50S ribosomal protein L1