SMTL ID : 3un3.3 (2 other biounits)

phosphopentomutase T85Q variant soaked with glucose 1,6-bisphosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.1: 4 residues within 4Å: Chain A: D.161, D.291, H.296, H.344 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.161, A:D.291, A:H.296, A:H.344, H2O.1 MN.2: 4 residues within 4Å: Chain A: D.18, Q.90, D.332, H.333 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.18, A:D.18, A:D.332, A:H.333, H2O.1 MN.3: 4 residues within 4Å: Chain A: F.31, G.32, D.33, H.339 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.32, A:D.33, A:H.339, H2O.4, H2O.7 MN.4: 1 residues within 4Å: Ligands: G16.5 6 PLIP interactions: 5 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: H2O.2, H2O.6, H2O.8, H2O.8, H2O.8, G16.5

1 x G16: 1,6-di-O-phosphono-alpha-D-glucopyranose(Non-covalent)

G16.5: 7 residues within 4Å: Chain A: K.223, N.231, K.234, G.252, E.253, G.254 Ligands: MN.4 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.231, A:K.234, A:E.253, A:G.254 Water bridges: A:K.223, A:K.223, A:K.223, A:D.235, A:V.255, A:V.255 Salt bridges: A:K.223, A:K.234, A:K.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iverson, T.M. et al., Molecular Differences between a Mutase and a Phosphatase: Investigations of the Activation Step in Bacillus cereus Phosphopentomutase. Biochemistry (2012)

Release Date

2012-02-29

Peptides

Phosphopentomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Phosphopentomutase

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