SMTL ID : 3ung.1

Structure of the Cmr2 subunit of the CRISPR RNA silencing complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.422, D.495, D.496 Ligands: CA.2, ADP.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.495, A:D.496, A:D.496 CA.2: 4 residues within 4Å: Chain A: D.422, G.423, D.495 Ligands: CA.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.422, A:G.423, A:D.495, H2O.2

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.270, C.273, C.300, C.303 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.270, A:C.273, A:C.300, A:C.303

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 9 residues within 4Å: Chain A: V.51, I.55, S.68, L.71, S.72, N.122, Y.491, D.496 Ligands: CA.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.52, A:S.68, A:S.72, A:N.122, A:D.496 pi-Stacking: A:Y.491, A:Y.491

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cocozaki, A.I. et al., Structure of the Cmr2 Subunit of the CRISPR-Cas RNA Silencing Complex. Structure (2012)

Release Date

2012-03-21

Peptides

Cmr2dHD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Cmr2dHD

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