SMTL ID : 3uoa.1

Crystal structure of the MALT1 paracaspase (P21 form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x VAL- ARG- PRO- ARG: Z-Val-Arg-Pro-DL-Arg-fluoromethylketone(Non-covalent)

VAL-ARG-PRO-ARG.1: 26 residues within 4Å: Chain A: K.21, L.22, K.23, A.24, P.25, D.28, Y.74, A.76, G.77, H.78, G.79, D.125, M.126, C.127, E.160, A.161, F.162, E.163, I.164, Q.165, H.166, G.172, I.173, L.204, T.205, K.208 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.22, A:F.162, A:F.162, A:Q.165, A:L.204 Hydrogen bonds: A:A.24, A:G.79, A:D.125, A:C.127, A:A.161, A:E.163, A:E.163, A:I.164, A:Q.165, A:H.166 Water bridges: A:Y.74, A:Q.165, A:Q.165 Salt bridges: A:D.28, A:D.125, A:E.163, A:E.163 VAL-ARG-PRO-ARG.2: 25 residues within 4Å: Chain B: K.21, L.22, K.23, A.24, P.25, D.28, Y.74, A.76, G.77, H.78, G.79, D.125, M.126, C.127, E.160, A.161, F.162, E.163, I.164, Q.165, H.166, G.172, L.204, T.205, K.208 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:L.22, B:F.162, B:F.162, B:L.204 Hydrogen bonds: B:A.24, B:G.79, B:D.125, B:C.127, B:A.161, B:E.163, B:E.163, B:I.164, B:Q.165 Salt bridges: B:D.28, B:D.125, B:E.163, B:E.163

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain B: E.51, R.55, E.100, N.101 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.51, B:E.51, H2O.10, H2O.11, H2O.14 MG.4: 2 residues within 4Å: Chain B: D.185, T.224 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.185, B:D.185, H2O.11, H2O.12, H2O.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, J.W. et al., Crystal structure of the mucosa-associated lymphoid tissue lymphoma translocation 1 (MALT1) paracaspase region. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-12-21

Peptides

Mucosa-associated lymphoid tissue lymphoma translocation protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Mucosa-associated lymphoid tissue lymphoma translocation protein 1

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