SMTL ID : 3upf.2 (3 other biounits)

Crystal structure of murine norovirus RNA-dependent RNA polymerase bound to NF023

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 0BU: 8-({3-[({3-[(4,6,8-trisulfonaphthalen-1-yl)carbamoyl]phenyl}carbamoyl)amino]benzoyl}amino)naphthalene-1,3,5-trisulfonic acid(Non-covalent)

0BU.1: 16 residues within 4Å: Chain A: W.52, D.75, Q.76, K.78, P.79, E.178, V.180, K.181, K.184, K.188, K.190, R.192, R.255, R.402, R.423 Ligands: SO4.3 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:D.75, A:K.78, A:V.180, A:K.190, A:K.190, A:R.255 Hydrogen bonds: A:Q.76, A:K.181, A:K.184, A:R.192, A:R.423 Water bridges: A:K.190, A:K.190, A:L.193, A:R.255 Salt bridges: A:K.78, A:K.181, A:K.181, A:K.184, A:K.188, A:R.255 pi-Stacking: A:W.52 pi-Cation interactions: A:K.184, A:R.255

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: V.332, R.336, V.337, D.338 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.337 Salt bridges: A:R.336 SO4.3: 4 residues within 4Å: Chain A: Y.253, T.254, R.255 Ligands: 0BU.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.255 Water bridges: A:R.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mastrangelo, E. et al., Structure-Based Inhibition of Norovirus RNA-Dependent RNA Polymerases. J.Mol.Biol. (2012)

Release Date

2012-05-02

Peptides

RNA-dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RNA-dependent RNA polymerase

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