SMTL ID : 3upg.1

Loop deletion mutant of Salmonella typhi osmoporin (OmpC):an Outer Membrane Protein.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-trimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.135, D.144 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.135, H2O.2, H2O.2 CA.2: 4 residues within 4Å: Chain A: N.311, L.313, T.326, D.328 No protein-ligand interaction detected (PLIP) CA.6: 2 residues within 4Å: Chain B: D.135, D.144 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.135, H2O.3, H2O.3 CA.7: 4 residues within 4Å: Chain B: N.311, L.313, T.326, D.328 No protein-ligand interaction detected (PLIP) CA.11: 2 residues within 4Å: Chain C: D.135, D.144 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.135, H2O.5, H2O.5 CA.12: 4 residues within 4Å: Chain C: N.311, L.313, T.326, D.328 No protein-ligand interaction detected (PLIP)

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: T.114, N.119, F.235 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: R.37, Q.59, W.72, R.74, R.124 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: N.69 Chain B: N.69 Chain C: N.69 Ligands: CL.10, CL.15 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: T.114, N.119, F.235 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain B: R.37, Q.59, W.72, R.74, R.124 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain A: N.69 Chain B: N.69 Chain C: N.69 Ligands: CL.5, CL.15 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain C: T.114, N.119, F.235 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain C: R.37, Q.59, W.72, R.74, R.124 Ligand excluded by PLIP CL.15: 5 residues within 4Å: Chain A: N.69 Chain B: N.69 Chain C: N.69 Ligands: CL.5, CL.10 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prasanth, P. et al., Crystal structure of osmoporin (OmpC) loop deletion mutant: an Outer membrane protein from Salmonella typhi. To be Published

Release Date

2012-11-28

Peptides

Outer membrane protein C: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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Outer membrane protein C