SMTL ID : 3ur9.1 (2 other biounits)

1.65A resolution structure of Norwalk Virus Protease Containing a covalently bound dipeptidyl inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: W.13, S.14, K.95 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: P.85, H.152, R.154 Ligand excluded by PLIP

1 x K36: (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid(Covalent)

K36.3: 12 residues within 4Å: Chain A: H.37, I.116, Q.117, R.119, T.141, I.142, P.143, C.146, H.164, A.165, A.166, A.167 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.116, A:R.119 Hydrogen bonds: A:Q.117, A:T.141, A:T.141, A:A.165, A:A.167 Water bridges: A:G.144, A:G.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Broad-Spectrum Antivirals against 3C or 3C-Like Proteases of Picornaviruses, Noroviruses, and Coronaviruses. J.Virol. (2012)

Release Date

2012-09-05

Peptides

3C-like protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3C-like protease

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