SMTL ID : 3urp.1

Re-refinement of PDB entry 5RNT - ribonuclease T1 with guanosine-3',5'-diphosphate and phosphate ion bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.19 Å

Oligo State

monomer

Ligands

1 x PGP: GUANOSINE-3',5'-DIPHOSPHATE(Non-covalent)

PGP.1: 13 residues within 4Å: Chain A: H.40, K.41, Y.42, N.43, N.44, Y.45, E.46, E.58, N.98, N.99, F.100 Ligands: PO4.2, UNX.3 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.41, A:Y.42, A:Y.42, A:N.43, A:N.43, A:N.44, A:Y.45, A:Y.45, A:N.98 Salt bridges: A:E.46

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: Y.38, H.40, E.58, R.77, H.92, F.100 Ligands: PGP.1, UNX.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.40 Salt bridges: A:R.77, A:H.92

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 4 residues within 4Å: Chain A: H.92, N.98 Ligands: PGP.1, PO4.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smart, O.S. et al., Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-03-28

Peptides

Guanyl-specific ribonuclease T1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Guanyl-specific ribonuclease T1

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