SMTL ID : 3usf.1

Crystal structure of DAVA-4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

homo-dimer

Ligands

2 x PLR: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE(Non-covalent)

PLR.1: 14 residues within 4Å: Chain A: S.116, G.117, T.118, Y.144, H.145, G.146, N.211, D.239, V.241, M.242, K.267 Chain B: G.298, T.299 Ligands: HOZ.2 15 PLIP interactions: 3 interactions with chain B, 12 interactions with chain A Hydrogen bonds: B:T.299, B:T.299, A:G.117, A:T.118, A:T.118, A:T.118, A:N.211, A:K.267 Water bridges: B:L.300, A:S.116, A:S.116, A:H.147 Hydrophobic interactions: A:Y.144, A:Y.144 Salt bridges: A:K.267 PLR.3: 12 residues within 4Å: Chain A: G.298, T.299 Chain B: S.116, G.117, T.118, Y.144, E.206, N.211, D.239, V.241, M.242, K.267 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:E.206, B:V.241 Hydrogen bonds: B:G.117, B:T.118, B:T.118, B:N.211, A:T.299, A:T.299, A:T.299 Water bridges: B:T.118, B:T.118, A:L.300 Salt bridges: B:K.267

1 x HOZ: (4S)-4,5-DIAMINOPENTANOIC ACID(Non-covalent)

HOZ.2: 12 residues within 4Å: Chain A: S.23, V.25, W.61, S.157, N.211, M.242, K.267, E.400 Chain B: A.297, G.298, T.299 Ligands: PLR.1 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:G.298, A:S.23, A:W.61, A:S.157, A:K.267 Water bridges: B:A.297, B:T.299 Hydrophobic interactions: A:V.25, A:W.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stetefeld, J., Crystal structure of DAVA-4. To be Published

Release Date

2012-12-05

Peptides

Glutamate-1-semialdehyde 2,1-aminomutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate-1-semialdehyde 2,1-aminomutase

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