SMTL ID : 3usq.2 (1 other biounit)

Structure of D159S/Y194F glycogenin mutant truncated at residue 270

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: H.49, R.50, A.129, N.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.130 Water bridges: A:N.130 GOL.2: 7 residues within 4Å: Chain A: E.139, L.140, F.190, F.191, S.193, K.201 Chain C: E.138 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:E.139, A:L.140, A:F.190, A:S.193, A:K.201, C:E.138 Water bridges: A:S.193 GOL.4: 4 residues within 4Å: Chain B: H.49, R.50, A.129, N.130 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.130 Water bridges: B:N.130 GOL.5: 7 residues within 4Å: Chain B: E.139, L.140, F.190, F.191, S.193, K.201 Chain D: E.138 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:E.139, B:L.140, B:F.190, B:S.193, B:K.201, D:E.138 Water bridges: B:S.193 GOL.7: 4 residues within 4Å: Chain C: H.49, R.50, A.129, N.130 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:H.49, C:N.130 Water bridges: C:N.130 GOL.8: 7 residues within 4Å: Chain A: E.138 Chain C: E.139, L.140, F.190, F.191, S.193, K.201 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:E.139, C:L.140, C:F.190, C:S.193, C:K.201, A:E.138 Water bridges: C:S.193 GOL.10: 4 residues within 4Å: Chain D: H.49, R.50, A.129, N.130 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:H.49, D:N.130 Water bridges: D:N.130 GOL.11: 7 residues within 4Å: Chain B: E.138 Chain D: E.139, L.140, F.190, F.191, S.193, K.201 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain D Hydrogen bonds: B:E.138, D:E.139, D:L.140, D:F.190, D:S.193, D:K.201 Water bridges: D:S.193

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: D.198, I.199 Ligands: CL.6, CL.9, CL.12 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain B: D.198, I.199 Ligands: CL.3, CL.9, CL.12 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain C: D.198, I.199 Ligands: CL.3, CL.6, CL.12 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain D: D.198, I.199 Ligands: CL.3, CL.6, CL.9 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Issoglio, F.M. et al., Mechanisms of monomeric and dimeric glycogenin autoglucosylation. J.Biol.Chem. (2012)

Release Date

2011-12-14

Peptides

Glycogenin-1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Glycogenin-1

Related Entries With Identical Sequence