SMTL ID : 3ust.1

Structure of BmNPV ORF075 (p33)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 21 residues within 4Å: Chain A: R.12, F.108, T.109, I.111, W.112, M.115, H.116, F.153, M.159, C.160, H.163, Y.164, M.224, H.227, N.228, V.230, N.231, K.234, Q.237, M.249, Y.254 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:F.108, A:I.111, A:W.112, A:W.112, A:F.153, A:Y.164 Hydrogen bonds: A:R.12, A:R.12, A:T.109, A:W.112, A:H.163, A:N.228, A:N.228, A:N.231, A:K.234, A:Q.237, A:Q.237, A:R.238 Water bridges: A:T.109 Salt bridges: A:H.227, A:K.234 pi-Stacking: A:F.153, A:H.227, A:H.227 FAD.2: 21 residues within 4Å: Chain B: R.12, F.108, T.109, I.111, W.112, M.115, H.116, F.153, M.159, C.160, H.163, Y.164, M.224, H.227, N.228, V.230, N.231, K.234, Q.237, M.249, Y.254 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:F.108, B:I.111, B:W.112, B:W.112, B:F.153, B:Y.164 Hydrogen bonds: B:R.12, B:R.12, B:W.112, B:N.228, B:N.228, B:N.231, B:K.234, B:Q.237, B:Q.237, B:R.238 Water bridges: B:Y.13, B:T.109 Salt bridges: B:H.227, B:K.234 pi-Stacking: B:F.153, B:H.227, B:H.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hou, Y. et al., Crystal structure of Bombyx mori nucleopolyhedrovirus ORF75 reveals a pseudo-dimer of thiol oxidase domains with a putative substrate-binding pocket. J.Gen.Virol. (2012)

Release Date

2012-10-10

Peptides

AcMNPV orf92: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

AcMNPV orf92