SMTL ID : 3ute.1

Crystal structure of Aspergillus fumigatus UDP galactopyranose mutase sulfate complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: G.17, G.19, P.20, T.21, D.41, S.42, G.48, L.49, A.50, V.63, G.64, G.65, H.66, G.243, K.244, V.245, T.271, M.272, T.298, F.418, H.420, G.421, G.449, R.450, G.459, N.460, Q.461, S.464 Ligands: SO4.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:L.49, A:V.63, A:F.418 Hydrogen bonds: A:G.19, A:T.21, A:T.21, A:T.21, A:G.22, A:S.42, A:L.49, A:A.50, A:H.66, A:H.66, A:V.245, A:V.245, A:R.450, A:N.460, A:Q.461, A:Q.461, A:S.464 Water bridges: A:G.47, A:T.271, A:R.330, A:F.451, A:F.451, A:N.460 pi-Cation interactions: A:R.450 FAD.7: 32 residues within 4Å: Chain B: I.16, G.17, A.18, G.19, P.20, T.21, G.22, D.41, S.42, G.48, L.49, A.50, V.63, G.64, G.65, H.66, G.243, K.244, V.245, T.271, M.272, T.298, F.418, H.420, G.421, G.449, R.450, G.459, N.460, Q.461, S.464 Ligands: SO4.8 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:L.49, B:V.63, B:F.418 Hydrogen bonds: B:G.19, B:T.21, B:T.21, B:T.21, B:G.22, B:S.42, B:L.49, B:A.50, B:H.66, B:H.66, B:V.245, B:V.245, B:T.271, B:R.450, B:N.460, B:Q.461, B:Q.461, B:S.464 Water bridges: B:A.18, B:G.48, B:R.330, B:F.451, B:F.451 pi-Cation interactions: B:R.450 FAD.15: 30 residues within 4Å: Chain C: G.17, G.19, P.20, T.21, G.22, D.41, S.42, G.48, L.49, A.50, V.63, G.64, G.65, H.66, G.243, K.244, V.245, T.271, M.272, T.298, F.418, H.420, G.421, G.449, R.450, G.459, N.460, Q.461, S.464 Ligands: SO4.17 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:L.49, C:V.63, C:F.418 Hydrogen bonds: C:G.19, C:T.21, C:T.21, C:T.21, C:G.22, C:S.42, C:L.49, C:L.49, C:A.50, C:H.66, C:H.66, C:V.245, C:V.245, C:R.450, C:N.460, C:Q.461, C:Q.461, C:S.464 Water bridges: C:R.330, C:F.451, C:F.451 pi-Cation interactions: C:R.450 FAD.19: 30 residues within 4Å: Chain D: G.17, G.19, P.20, T.21, G.22, D.41, S.42, G.48, L.49, A.50, V.63, G.64, G.65, H.66, G.243, K.244, V.245, T.271, M.272, T.298, F.418, H.420, G.421, G.449, R.450, G.459, N.460, Q.461, S.464 Ligands: SO4.21 26 PLIP interactions: 26 interactions with chain D Hydrophobic interactions: D:L.49, D:V.63, D:F.418 Hydrogen bonds: D:G.19, D:T.21, D:T.21, D:T.21, D:G.22, D:S.42, D:L.49, D:L.49, D:H.66, D:H.66, D:V.245, D:V.245, D:T.271, D:R.450, D:N.460, D:Q.461, D:Q.461, D:S.464 Water bridges: D:R.330, D:F.451, D:F.451, D:N.460 pi-Cation interactions: D:R.450

17 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: H.66, Y.422, R.450, Y.456, N.460 Ligands: FAD.1 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: H.66, F.69 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: P.310, E.311, R.312, K.405 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: R.309, D.315 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: N.43, D.53, R.416 Ligand excluded by PLIP SO4.8: 6 residues within 4Å: Chain B: H.66, Y.422, R.450, Y.456, N.460 Ligands: FAD.7 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain B: H.66, F.69, H.71, R.94 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain B: N.43, D.53, R.416 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain B: N.386, T.389, D.393 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain B: P.310, E.311, R.312, K.405 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain C: H.66, F.69, H.71, R.94 Ligand excluded by PLIP SO4.17: 7 residues within 4Å: Chain C: H.66, Y.422, R.450, Y.456, G.459, N.460 Ligands: FAD.15 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain C: P.310, E.311, R.312, K.405 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain D: H.66, F.69 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain D: H.66, Y.422, R.450, Y.456, N.460 Ligands: FAD.19 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain D: P.117, K.118 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain D: P.310, E.311, R.312, K.405 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.13: 2 residues within 4Å: Chain B: E.323, D.324 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.323 Water bridges: B:D.324, B:D.324

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.14: 5 residues within 4Å: Chain B: R.416, R.417, F.418, D.419, H.420 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.416, B:D.419, B:H.420, B:H.420

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dhatwalia, R. et al., Crystal Structures and Small-angle X-ray Scattering Analysis of UDP-galactopyranose Mutase from the Pathogenic Fungus Aspergillus fumigatus. J.Biol.Chem. (2012)

Release Date

2012-02-08

Peptides

UDP-galactopyranose mutase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

UDP-galactopyranose mutase

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