SMTL ID : 3utg.1

Crystal structure of Aspergillus fumigatus UDP galactopyranose mutase complexed with UDP in reduced state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-tetramer

Ligands

4 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)

FDA.1: 30 residues within 4Å: Chain A: G.17, G.19, P.20, T.21, D.41, S.42, G.47, G.48, L.49, A.50, V.63, G.65, H.66, V.67, F.69, G.243, K.244, V.245, M.272, T.298, R.330, E.376, G.421, Y.422, G.449, R.450, G.459, N.460, Q.461, S.464 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:T.298, A:Y.422 Hydrogen bonds: A:G.19, A:T.21, A:T.21, A:T.21, A:S.42, A:G.48, A:L.49, A:A.50, A:G.65, A:H.66, A:V.67, A:V.67, A:V.245, A:V.245, A:R.450, A:G.459, A:Q.461, A:Q.461, A:S.464 Water bridges: A:G.22, A:D.41, A:D.41, A:R.450, A:R.450, A:F.451, A:F.451, A:F.451, A:D.462, A:D.462 pi-Stacking: A:H.66 FDA.6: 30 residues within 4Å: Chain B: G.17, G.19, P.20, T.21, G.22, D.41, S.42, G.47, G.48, L.49, A.50, V.63, G.65, H.66, V.67, F.69, G.243, K.244, V.245, M.272, Y.329, E.376, G.421, Y.422, G.449, R.450, G.459, N.460, Q.461, S.464 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:Y.422 Hydrogen bonds: B:G.19, B:T.21, B:T.21, B:T.21, B:G.22, B:S.42, B:G.47, B:G.48, B:L.49, B:G.65, B:H.66, B:V.67, B:V.67, B:V.245, B:V.245, B:R.450, B:G.459, B:Q.461, B:Q.461, B:S.464 Water bridges: B:D.41, B:D.41, B:F.69, B:N.210, B:R.450, B:R.450, B:F.451, B:F.451 pi-Stacking: B:H.66 FDA.11: 30 residues within 4Å: Chain C: G.17, G.19, P.20, T.21, G.22, D.41, S.42, G.48, L.49, A.50, V.63, G.65, H.66, V.67, G.243, K.244, V.245, T.271, M.272, T.298, R.330, E.376, G.421, Y.422, G.449, R.450, G.459, N.460, Q.461, S.464 29 PLIP interactions: 29 interactions with chain C Hydrophobic interactions: C:V.63, C:T.298, C:Y.422 Hydrogen bonds: C:G.19, C:T.21, C:T.21, C:T.21, C:G.22, C:S.42, C:G.47, C:G.48, C:L.49, C:G.65, C:H.66, C:V.67, C:V.67, C:V.245, C:V.245, C:R.450, C:G.459, C:Q.461, C:Q.461, C:S.464 Water bridges: C:D.41, C:D.41, C:F.69, C:F.451, C:F.451 pi-Stacking: C:H.66 FDA.18: 30 residues within 4Å: Chain D: G.17, A.18, G.19, P.20, T.21, D.41, S.42, G.48, L.49, A.50, V.63, G.65, H.66, V.67, G.243, K.244, V.245, T.271, M.272, T.298, R.330, E.376, G.421, Y.422, G.449, R.450, G.459, N.460, Q.461, S.464 29 PLIP interactions: 29 interactions with chain D Hydrophobic interactions: D:T.298, D:Y.422 Hydrogen bonds: D:A.18, D:G.19, D:T.21, D:T.21, D:T.21, D:S.42, D:G.47, D:G.48, D:L.49, D:G.65, D:H.66, D:V.67, D:V.67, D:V.245, D:V.245, D:T.271, D:R.450, D:G.459, D:Q.461, D:Q.461, D:S.464 Water bridges: D:G.22, D:F.69, D:F.451, D:F.451, D:D.462 pi-Stacking: D:H.66

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: P.310, E.311, R.312, K.405 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: K.85, E.86 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: K.73, R.499 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain B: N.43, D.53, R.416 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: P.310, E.311, R.312, K.405 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain B: N.485, Y.486, P.487, D.488, F.489 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain C: P.310, E.311, R.312, K.405 Ligands: SO4.17 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain C: R.309, D.315 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain C: R.94, Y.107, N.206, W.318 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain C: P.117, K.118 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain C: V.150, T.155, R.163 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain C: P.310, R.312, K.405, D.408 Ligands: SO4.12 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain D: P.310, E.311, R.312, K.405 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain D: R.309, D.315 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain D: R.94, Y.107, N.206, W.318 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain D: P.117, K.118 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain D: V.150, T.155, R.163 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain D: W.89, Y.90, T.91 Ligand excluded by PLIP

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.5: 17 residues within 4Å: Chain A: V.98, Y.107, P.108, F.109, Q.110, F.145, F.161, M.162, Y.165, N.166, W.170, R.185, V.186, Y.320, R.330, Y.422, Y.456 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.107, A:F.161 Hydrogen bonds: A:F.109, A:Q.110, A:Q.110, A:N.166, A:N.166, A:R.185, A:Y.320, A:Y.320, A:Y.456 Water bridges: A:A.187, A:N.460, A:N.460 Salt bridges: A:R.330, A:R.330 pi-Stacking: A:Y.320 UDP.10: 16 residues within 4Å: Chain B: V.98, Y.107, P.108, F.109, Q.110, F.161, M.162, Y.165, N.166, W.170, R.185, V.186, Y.320, R.330, Y.422, Y.456 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:Y.107, B:F.161 Hydrogen bonds: B:F.109, B:Q.110, B:Q.110, B:N.166, B:N.166, B:R.185, B:Y.320, B:Y.422 Water bridges: B:A.187, B:A.187, B:Y.320, B:Y.320, B:N.460, B:N.460 Salt bridges: B:R.330, B:R.330 pi-Stacking: B:Y.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dhatwalia, R. et al., Crystal Structures and Small-angle X-ray Scattering Analysis of UDP-galactopyranose Mutase from the Pathogenic Fungus Aspergillus fumigatus. J.Biol.Chem. (2012)

Release Date

2012-02-08

Peptides

UDP-galactopyranose mutase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

UDP-galactopyranose mutase

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