SMTL ID : 3utn.1

Crystal structure of Tum1 protein from Saccharomyces cerevisiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

9 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 8 residues within 4Å: Chain A: P.25, L.26, F.27, D.28, P.140, K.141, V.142, Y.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.142 Salt bridges: A:D.28 pi-Cation interactions: A:Y.143 DMS.2: 3 residues within 4Å: Chain A: P.232, E.320, W.321 No protein-ligand interaction detected (PLIP) DMS.3: 5 residues within 4Å: Chain A: P.25, F.27, T.293, E.296, L.297 3 PLIP interactions: 3 interactions with chain A Water bridges: A:L.26 Salt bridges: A:E.296 pi-Cation interactions: A:F.27 DMS.4: 6 residues within 4Å: Chain A: P.274, S.275, K.276, P.277, P.301, N.302 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.302 DMS.5: 4 residues within 4Å: Chain A: S.179, F.180, Q.181, D.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.181, A:D.182 Salt bridges: A:D.182 DMS.6: 1 residues within 4Å: Chain A: K.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.64 Salt bridges: A:D.62 DMS.7: 3 residues within 4Å: Chain A: I.30, L.38, Y.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.143 DMS.8: 4 residues within 4Å: Chain A: L.315, K.316, S.317, G.318 No protein-ligand interaction detected (PLIP) DMS.9: 4 residues within 4Å: Chain A: A.83, A.104, N.107, L.108 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.107

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 4 residues within 4Å: Chain A: A.201, G.233, T.234, Q.235 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.234 Water bridges: A:G.233, A:Q.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, R. et al., Crystal structure of the Tum1 protein from the yeast Saccharomyces cerevisiae. Protein Pept.Lett. (2012)

Release Date

2012-10-17

Peptides

Thiosulfate sulfurtransferase TUM1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Thiosulfate sulfurtransferase TUM1