SMTL ID : 3utv.2 (1 other biounit)

Crystal structure of bacteriorhodopsin mutant Y57F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-dimer

Ligands

2 x RET: RETINAL(Covalent)

RET.1: 17 residues within 4Å: Chain A: Y.83, W.86, T.89, T.90, L.93, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.83, A:T.90, A:L.93, A:M.145, A:W.182, A:Y.185, A:Y.185, A:Y.185, A:Y.185, A:Y.185, A:P.186, A:W.189, A:A.215, A:K.216 RET.3: 17 residues within 4Å: Chain B: Y.83, W.86, T.89, T.90, L.93, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Y.83, B:T.90, B:L.93, B:M.145, B:W.182, B:Y.185, B:Y.185, B:Y.185, B:Y.185, B:Y.185, B:P.186, B:W.189, B:A.215, B:K.216

2 x MC3: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

MC3.2: 13 residues within 4Å: Chain A: S.132, Y.133, F.135, V.136, W.138, A.139, T.142, L.190 Chain B: A.143, L.146, Y.147, Y.150 Ligands: MC3.4 14 PLIP interactions: 7 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:F.135, A:V.136, A:W.138, A:A.139, A:T.142, A:L.190, B:L.146, B:L.146, B:Y.147, B:Y.150, B:Y.150 Hydrogen bonds: A:S.132, B:Y.150, B:Y.150 MC3.4: 13 residues within 4Å: Chain A: A.143, L.146, Y.147, Y.150 Chain B: S.132, Y.133, F.135, V.136, W.138, A.139, T.142, L.190 Ligands: MC3.2 14 PLIP interactions: 7 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:F.135, B:V.136, B:W.138, B:A.139, B:T.142, B:L.190, A:L.146, A:L.146, A:Y.147, A:Y.150, A:Y.150 Hydrogen bonds: B:S.132, A:Y.150, A:Y.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, Z. et al., Shifting hydrogen bonds may produce flexible transmembrane helices. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-05-09

Peptides

Bacteriorhodopsin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Membrane

We predict this structure to be a membrane protein.
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Bacteriorhodopsin

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