SMTL ID : 3uue.1

Crystal structure of mono- and diacylglycerol lipase from Malassezia globosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 10 residues within 4Å: Chain A: N.228, F.253, D.254, D.255, Q.257, G.258, I.259, Q.264, G.266, M.269 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.257 Water bridges: A:D.254, A:D.254

1 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.2: 1 residues within 4Å: Chain A: T.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.8

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: E.52, G.53, Y.54, A.55, R.56 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: W.223, Y.225, Y.235, V.247 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.235 Water bridges: A:Y.225, A:Y.225, A:H.242 GOL.5: 5 residues within 4Å: Chain A: G.1, G.4, S.6, G.237, Q.238 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.238, A:Q.238 GOL.6: 2 residues within 4Å: Chain A: Q.9, V.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.9 GOL.7: 2 residues within 4Å: Chain A: W.91, Q.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.92 Water bridges: A:F.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, T. et al., Crystal structure of a mono- and diacylglycerol lipase from Malassezia globosa reveals a novel lid conformation and insights into the substrate specificity. J.Struct.Biol. (2012)

Release Date

2012-04-25

Peptides

LIP1, secretory lipase (Family 3): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LIP1, secretory lipase (Family 3)