SMTL ID : 3uwa.1

Crystal structure of a probable peptide deformylase from synechococcus phage S-SSM7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.50, C.93, H.135, E.136, H.139 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.93, A:H.135, A:H.139, H2O.65

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.2: 6 residues within 4Å: Chain A: E.62, H.72, W.123, L.125, A.129 Ligands: MRD.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.123, A:W.123, A:A.129 MRD.3: 7 residues within 4Å: Chain A: V.60, D.61, E.62, L.128, A.129, V.132 Ligands: MRD.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.60, A:L.128, A:A.129, A:V.132 Hydrogen bonds: A:D.61 Water bridges: A:D.61, A:A.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frank, J.A. et al., Structure and function of a cyanophage-encoded peptide deformylase. ISME J (2013)

Release Date

2013-01-09

Peptides

RIIA-RIIB membrane-associated protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RIIA-RIIB membrane-associated protein

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