SMTL ID : 3uwb.1

Crystal structure of a probable peptide deformylase from strucynechococcus phage S-SSM7 in complex with actinonin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.50, C.93, H.135, H.139 Ligands: BB2.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.93, A:H.135, A:H.139

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: G.127, L.128 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: T.64, E.65, E.66 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.65, A:E.66

1 x BB2: ACTINONIN(Non-covalent)

BB2.4: 16 residues within 4Å: Chain A: D.42, G.43, I.44, G.45, Q.50, F.89, D.90, E.91, G.92, C.93, L.94, R.131, H.135, E.136, H.139 Ligands: ZN.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.44, A:E.91, A:L.94, A:R.131, A:H.135 Hydrogen bonds: A:I.44, A:G.45, A:Q.50, A:G.92, A:G.92, A:L.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frank, J.A. et al., Structure and function of a cyanophage-encoded peptide deformylase. ISME J (2013)

Release Date

2013-01-09

Peptides

RIIA-RIIB membrane-associated protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RIIA-RIIB membrane-associated protein

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