SMTL ID : 3uwk.3 (2 other biounits)

Structure Guided Development of Novel Thymidine Mimetics targeting Pseudomonas aeruginosa Thymidylate Kinase: from Hit to Lead Generation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-dimer

Ligands

2 x 0DF: 1-methyl-6-phenyl-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one(Non-covalent)

0DF.1: 13 residues within 4Å: Chain A: E.32, E.59, P.60, L.74, M.90, R.94, R.116, F.117, A.120, T.121, Y.124, Q.125, F.175 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.74, A:Y.124, A:F.175, A:F.175 Hydrogen bonds: A:R.94, A:R.94, A:Q.125, A:Q.125 pi-Cation interactions: A:R.116 0DF.3: 14 residues within 4Å: Chain B: E.32, E.59, P.60, L.74, M.90, R.94, R.116, F.117, A.120, T.121, Y.124, Q.125, D.173, F.175 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:E.32, B:L.74, B:L.74, B:Y.124, B:F.175, B:F.175 Hydrogen bonds: B:R.94, B:R.94, B:Q.125, B:Q.125 pi-Cation interactions: B:R.116

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: E.178, D.179 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, J.Y. et al., Structure guided development of novel thymidine mimetics targeting Pseudomonas aeruginosa thymidylate kinase: from hit to lead generation. J.Med.Chem. (2012)

Release Date

2012-02-01

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidylate kinase

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