SMTL ID : 3uwo.3 (2 other biounits)

Structure Guided Development of Novel Thymidine Mimetics targeting Pseudomonas aeruginosa Thymidylate Kinase: from Hit to Lead Generation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x 0DJ: 3-(1-methyl-2-oxo-2,3-dihydro-1H-imidazo[4,5-b]pyridin-6-yl)benzamide(Non-covalent)

0DJ.1: 15 residues within 4Å: Chain A: E.20, E.47, P.48, R.58, M.78, R.82, R.104, F.105, A.108, T.109, Y.112, Q.113, F.163, E.164, F.171 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.112, A:F.163, A:F.163 Hydrogen bonds: A:R.82, A:R.82, A:Y.112, A:Q.113, A:Q.113 Water bridges: A:E.20, A:Y.112, A:D.161 pi-Cation interactions: A:R.104 0DJ.2: 16 residues within 4Å: Chain B: E.20, E.47, P.48, R.58, M.78, R.82, R.104, F.105, A.108, T.109, Y.112, Q.113, D.161, F.163, E.164, F.171 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:Y.112, B:F.163, B:F.163 Hydrogen bonds: B:R.82, B:R.82, B:Q.113, B:Q.113, B:D.161 Water bridges: B:E.20 pi-Stacking: B:Y.112 pi-Cation interactions: B:R.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, J.Y. et al., Structure guided development of novel thymidine mimetics targeting Pseudomonas aeruginosa thymidylate kinase: from hit to lead generation. J.Med.Chem. (2012)

Release Date

2012-02-01

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidylate kinase

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