SMTL ID : 3uze.1 (1 other biounit)

Crystal structure of the dengue virus serotype 3 envelope protein domain III in complex with the variable domains of Mab 4E11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

hetero-1-1-mer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: Q.173, K.181, R.197, F.198, D.217, D.218 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.173, A:K.181, A:K.181, A:R.197, A:D.218, A:D.218 EDO.2: 9 residues within 4Å: Chain A: Y.34, R.51, W.101, R.163, S.227, N.228, E.229, W.232 Chain B: E.17 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.51, A:R.51, A:N.228 Water bridges: A:V.230 EDO.6: 3 residues within 4Å: Chain B: E.17, V.18, S.19 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: S.8, G.9, A.10, E.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.9, A:E.11 GOL.4: 9 residues within 4Å: Chain A: R.99, G.100, W.101, E.102, G.103, A.105 Chain B: V.13, L.14, E.31 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:L.14, B:E.31, A:R.99, A:W.101, A:E.102 Water bridges: B:K.33, A:A.105 GOL.5: 3 residues within 4Å: Chain A: A.73, D.74, T.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.74, A:T.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cockburn, J.J. et al., Mechanism of dengue virus broad cross-neutralization by a monoclonal antibody. Structure (2012)

Release Date

2012-02-22

Peptides

Variable domains of murine anti-dengue Mab 4E11: A
Envelope protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Variable domains of murine anti-dengue Mab 4E11

Envelope protein

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