SMTL ID : 3v09.1

Crystal structure of Rabbit Serum Albumin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 9 residues within 4Å: Chain A: L.387, N.391, F.403, L.407, R.410, Y.411, L.430, L.453, S.489 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.411 Water bridges: A:K.414, A:K.414 Salt bridges: A:R.410, A:K.414 MES.4: 7 residues within 4Å: Chain A: F.115, R.117, V.142, H.146, Y.161, E.186, L.190 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.161 Salt bridges: A:R.117, A:E.186

3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 7 residues within 4Å: Chain A: Y.401, N.402, N.405, A.406, N.541, K.545, G.549 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.405, A:K.545, A:K.545 PG4.3: 7 residues within 4Å: Chain A: E.17, I.20, L.24, Y.36, V.43, K.132, G.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.36, A:K.132 PG4.33: 3 residues within 4Å: Chain A: D.400, K.432, S.435 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.435

22 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.5: 6 residues within 4Å: Chain A: R.199, Y.211 Ligands: UNX.6, UNX.7, UNX.8, UNX.9 Ligand excluded by PLIP UNX.6: 6 residues within 4Å: Chain A: R.199, W.214 Ligands: UNX.5, UNX.7, UNX.8, UNX.9 Ligand excluded by PLIP UNX.7: 5 residues within 4Å: Chain A: L.238 Ligands: UNX.5, UNX.6, UNX.8, UNX.9 Ligand excluded by PLIP UNX.8: 9 residues within 4Å: Chain A: R.199, W.214 Ligands: UNX.5, UNX.6, UNX.7, UNX.9, UNX.10, UNX.11, UNX.14 Ligand excluded by PLIP UNX.9: 11 residues within 4Å: Chain A: R.222, Y.291 Ligands: UNX.5, UNX.6, UNX.7, UNX.8, UNX.10, UNX.11, UNX.12, UNX.14, UNX.15 Ligand excluded by PLIP UNX.10: 10 residues within 4Å: Chain A: R.222, Y.291 Ligands: UNX.8, UNX.9, UNX.11, UNX.12, UNX.13, UNX.14, UNX.15, UNX.16 Ligand excluded by PLIP UNX.11: 11 residues within 4Å: Chain A: Q.195, R.199, R.222, Y.291 Ligands: UNX.8, UNX.9, UNX.10, UNX.12, UNX.13, UNX.14, UNX.15 Ligand excluded by PLIP UNX.12: 10 residues within 4Å: Chain A: Q.195, R.222, Y.291, G.292 Ligands: UNX.9, UNX.10, UNX.11, UNX.13, UNX.14, UNX.15 Ligand excluded by PLIP UNX.13: 5 residues within 4Å: Chain A: Q.195, Y.291 Ligands: UNX.10, UNX.11, UNX.12 Ligand excluded by PLIP UNX.14: 12 residues within 4Å: Chain A: W.214, R.218, R.222 Ligands: UNX.8, UNX.9, UNX.10, UNX.11, UNX.12, UNX.15, UNX.16, UNX.17, UNX.18 Ligand excluded by PLIP UNX.15: 10 residues within 4Å: Chain A: R.218 Ligands: UNX.9, UNX.10, UNX.11, UNX.12, UNX.14, UNX.16, UNX.17, UNX.18, UNX.21 Ligand excluded by PLIP UNX.16: 8 residues within 4Å: Ligands: UNX.10, UNX.14, UNX.15, UNX.17, UNX.18, UNX.19, UNX.21, UNX.22 Ligand excluded by PLIP UNX.17: 8 residues within 4Å: Ligands: UNX.14, UNX.15, UNX.16, UNX.18, UNX.19, UNX.20, UNX.21, UNX.22 Ligand excluded by PLIP UNX.18: 10 residues within 4Å: Chain A: Q.195, W.214 Ligands: UNX.14, UNX.15, UNX.16, UNX.17, UNX.19, UNX.20, UNX.21, UNX.22 Ligand excluded by PLIP UNX.19: 8 residues within 4Å: Chain A: Q.195, V.455 Ligands: UNX.16, UNX.17, UNX.18, UNX.20, UNX.21, UNX.22 Ligand excluded by PLIP UNX.20: 5 residues within 4Å: Chain A: Q.195, W.214 Ligands: UNX.17, UNX.18, UNX.19 Ligand excluded by PLIP UNX.21: 9 residues within 4Å: Chain A: D.451 Ligands: UNX.15, UNX.16, UNX.17, UNX.18, UNX.19, UNX.22, UNX.23, UNX.24 Ligand excluded by PLIP UNX.22: 9 residues within 4Å: Chain A: Q.195 Ligands: UNX.16, UNX.17, UNX.18, UNX.19, UNX.21, UNX.23, UNX.24, UNX.25 Ligand excluded by PLIP UNX.23: 6 residues within 4Å: Chain A: Y.452 Ligands: UNX.21, UNX.22, UNX.24, UNX.25, UNX.26 Ligand excluded by PLIP UNX.24: 7 residues within 4Å: Chain A: I.191, Y.452 Ligands: UNX.21, UNX.22, UNX.23, UNX.25, UNX.26 Ligand excluded by PLIP UNX.25: 5 residues within 4Å: Chain A: Y.452 Ligands: UNX.22, UNX.23, UNX.24, UNX.26 Ligand excluded by PLIP UNX.26: 4 residues within 4Å: Chain A: C.448 Ligands: UNX.23, UNX.24, UNX.25 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.27: 1 residues within 4Å: Chain A: K.389 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.389 EDO.28: 3 residues within 4Å: Chain A: E.383, P.486, A.490 No protein-ligand interaction detected (PLIP) EDO.29: 4 residues within 4Å: Chain A: S.489, A.490, L.491, G.492 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.489 EDO.30: 1 residues within 4Å: Chain A: D.324 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.324, A:D.324 EDO.31: 2 residues within 4Å: Chain A: H.67, D.249 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.249 Water bridges: A:E.252, A:E.252

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.32: 3 residues within 4Å: Chain A: Y.150, R.257, Y.291 Ligand excluded by PLIP

Links

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Citation

Majorek, K.A. et al., Structural and immunologic characterization of bovine, horse, and rabbit serum albumins. Mol.Immunol. (2012)

Release Date

2012-01-18

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin