SMTL ID : 3v1r.1

Crystal structures of the reverse transcriptase-associated ribonuclease H domain of XMRV with inhibitor beta-thujaplicinol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Q.68, S.93, R.94, Y.95 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.68, A:S.93, A:R.94, A:Y.95 SO4.2: 2 residues within 4Å: Chain A: L.38, R.43 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.43 SO4.3: 4 residues within 4Å: Chain A: S.36, F.37, L.38, R.43 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.36, A:L.38 Salt bridges: A:R.43 SO4.4: 1 residues within 4Å: Chain A: R.110 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.110

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.5: 6 residues within 4Å: Chain A: R.69, R.118, I.120, K.121, N.122, K.123 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.118, A:K.121 Hydrogen bonds: A:R.69

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.6: 5 residues within 4Å: Chain A: D.33, E.71, D.92 Ligands: MN.7, JTH.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.33, A:E.71, A:D.92, A:D.92 MN.7: 7 residues within 4Å: Chain A: D.33, G.34, H.147, D.162, R.166 Ligands: MN.6, JTH.8 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.33, A:D.162

1 x JTH: 2,7-dihydroxy-4-(propan-2-yl)cyclohepta-2,4,6-trien-1-one(Non-covalent)

JTH.8: 8 residues within 4Å: Chain A: D.33, E.71, D.92, H.147, D.162, R.166 Ligands: MN.6, MN.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.166, A:R.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, D. et al., Crystal structures of the reverse transcriptase-associated ribonuclease H domain of xenotropic murine leukemia-virus related virus. J.Struct.Biol. (2012)

Release Date

2012-03-14

Peptides

Reverse transcriptase/ribonuclease H p80: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reverse transcriptase/ribonuclease H p80

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