SMTL ID : 3v1x.1

Crystal structure of 2-methylisoborneol synthase from Streptomyces coelicolor A3(2) in complex with Mg2+ and 2-fluorogeranyl diphosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: R.321, N.366, S.370, E.374 Ligands: 0FV.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.370, A:E.374, H2O.8 MG.2: 2 residues within 4Å: Chain A: D.218 Ligands: 0FV.3 No protein-ligand interaction detected (PLIP) MG.4: 5 residues within 4Å: Chain B: R.321, N.366, S.370, E.374 Ligands: 0FV.6 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.370, B:E.374, H2O.18 MG.5: 2 residues within 4Å: Chain B: D.218 Ligands: 0FV.6 No protein-ligand interaction detected (PLIP)

2 x 0FV: (2Z)-2-fluoro-3,7-dimethylocta-2,6-dien-1-yl trihydrogen diphosphate(Non-covalent)

0FV.3: 18 residues within 4Å: Chain A: M.211, E.214, L.295, Y.299, R.321, N.324, N.325, F.326, C.329, T.363, N.366, S.370, K.373, E.374, R.454, Y.455 Ligands: MG.1, MG.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:E.214, A:E.214, A:L.295, A:F.326, A:T.363 Hydrogen bonds: A:N.366, A:N.366, A:S.370, A:Y.455, A:Y.455 Water bridges: A:R.321 Salt bridges: A:R.321, A:K.373, A:R.454 0FV.6: 18 residues within 4Å: Chain B: M.211, E.214, L.295, Y.299, R.321, N.324, N.325, F.326, C.329, T.363, N.366, S.370, K.373, E.374, R.454, Y.455 Ligands: MG.4, MG.5 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:E.214, B:E.214, B:L.295, B:F.326, B:T.363 Hydrogen bonds: B:N.366, B:N.366, B:S.370, B:Y.455 Water bridges: B:R.321, B:Y.455, B:Y.455 Salt bridges: B:R.321, B:K.373, B:R.454

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koksal, M. et al., Structure of 2-Methylisoborneol Synthase from Streptomyces coelicolor and Implications for the Cyclization of a Noncanonical C-Methylated Monoterpenoid Substrate. Biochemistry (2012)

Release Date

2012-04-11

Peptides

2-methylisoborneol synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

2-methylisoborneol synthase

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