SMTL ID : 3v2b.1

Human poly(adp-ribose) polymerase 15 (ARTD7, BAL3), macro domain 2 in complex with adenosine-5-diphosphoribose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.1: 23 residues within 4Å: Chain A: G.40, D.41, I.42, S.53, T.54, A.55, R.56, R.60, S.62, G.63, V.64, A.67, G.109, G.110, A.136, G.138, T.139, G.140, N.141, A.142, F.177, Q.178, L.181 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:D.41, A:I.42, A:S.53, A:R.56, A:S.62, A:V.64, A:G.109, A:G.110, A:G.138, A:G.140, A:N.141, A:N.141, A:A.142, A:Q.178 Water bridges: A:R.56, A:R.60, A:R.60, A:R.60, A:R.60, A:S.65, A:F.177, A:F.177, A:Q.178 Salt bridges: A:R.60 pi-Stacking: A:F.177 AR6.2: 23 residues within 4Å: Chain B: G.40, D.41, I.42, S.53, T.54, A.55, R.56, R.60, S.62, G.63, V.64, A.67, G.109, G.110, A.136, G.138, T.139, G.140, N.141, A.142, F.177, Q.178, L.181 27 PLIP interactions: 27 interactions with chain B Hydrogen bonds: B:D.41, B:D.41, B:I.42, B:S.53, B:R.56, B:S.62, B:V.64, B:G.109, B:G.110, B:G.138, B:T.139, B:G.140, B:N.141, B:N.141, B:A.142, B:Q.178 Water bridges: B:R.56, B:R.60, B:R.60, B:R.60, B:R.60, B:S.65, B:F.177, B:F.177, B:Q.178 Salt bridges: B:R.60 pi-Stacking: B:F.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Forst, A.H. et al., Recognition of Mono-ADP-Ribosylated ARTD10 Substrates by ARTD8 Macrodomains. Structure (2013)

Release Date

2011-12-21

Peptides

Poly [ADP-ribose] polymerase 15: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Poly [ADP-ribose] polymerase 15