SMTL ID : 3v35.1

Aldose reductase complexed with a nitro compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 31 residues within 4Å: Chain A: G.39, T.40, W.41, K.42, D.64, Y.69, K.98, H.131, S.180, N.181, Q.204, Y.230, S.231, P.232, L.233, G.234, S.235, P.236, D.237, L.249, A.266, I.281, P.282, K.283, S.284, V.285, T.286, R.289, E.292, N.293 Ligands: DMF.3 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:W.41 Hydrogen bonds: A:T.40, A:W.41, A:D.64, A:D.64, A:Y.69, A:S.180, A:N.181, A:Q.204, A:S.231, A:L.233, A:G.234, A:S.235, A:S.235, A:D.237, A:D.237, A:K.283, A:S.284, A:V.285, A:T.286, A:T.286, A:E.292, A:N.293 Water bridges: A:T.264, A:T.264, A:R.289, A:R.289 Salt bridges: A:K.42, A:K.42, A:K.283, A:R.289 pi-Stacking: A:Y.230 pi-Cation interactions: A:R.289

1 x NTI: 2-[(5-nitro-1,3-thiazol-2-yl)carbamoyl]phenyl acetate(Non-covalent)

NTI.2: 14 residues within 4Å: Chain A: W.41, V.68, W.100, H.131, W.132, F.143, P.239, W.240 Ligands: DMF.3, DMF.7, DMF.14, DMF.16, DMF.17, DMF.22 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.239 Hydrogen bonds: A:W.132 Water bridges: A:W.41

23 x DMF: DIMETHYLFORMAMIDE(Non-covalent)(Non-functional Binders)

DMF.3: 7 residues within 4Å: Chain A: W.41, Y.69, H.131, W.132, C.319 Ligands: NAP.1, NTI.2 Ligand excluded by PLIP DMF.4: 2 residues within 4Å: Chain A: K.110, E.171 Ligand excluded by PLIP DMF.5: 9 residues within 4Å: Chain A: H.208, Y.210, L.233, G.234, R.238, P.246, S.247, L.248, W.316 Ligand excluded by PLIP DMF.6: 7 residues within 4Å: Chain A: H.67, T.102, Y.103, G.139, K.140, E.141, F.142 Ligand excluded by PLIP DMF.7: 7 residues within 4Å: Chain A: W.41, V.68, Y.69, Q.70 Ligands: NTI.2, DMF.17, DMF.25 Ligand excluded by PLIP DMF.8: 1 residues within 4Å: Chain A: R.253 Ligand excluded by PLIP DMF.9: 3 residues within 4Å: Chain A: I.217, Q.221, R.276 Ligand excluded by PLIP DMF.10: 3 residues within 4Å: Chain A: Q.218, Y.219, F.336 Ligand excluded by PLIP DMF.11: 5 residues within 4Å: Chain A: N.157, L.159, D.160, K.193, P.194 Ligand excluded by PLIP DMF.12: 4 residues within 4Å: Chain A: N.29, G.30, A.31, K.175 Ligand excluded by PLIP DMF.13: 7 residues within 4Å: Chain A: N.28, N.29, A.176, I.177, Y.198, K.199, A.201 Ligand excluded by PLIP DMF.14: 7 residues within 4Å: Chain A: F.143, L.145, S.323 Ligands: NTI.2, DMF.16, DMF.17, DMF.22 Ligand excluded by PLIP DMF.15: 3 residues within 4Å: Chain A: R.253, S.311, Y.312 Ligand excluded by PLIP DMF.16: 3 residues within 4Å: Ligands: NTI.2, DMF.14, DMF.17 Ligand excluded by PLIP DMF.17: 7 residues within 4Å: Chain A: V.68, F.142, F.143 Ligands: NTI.2, DMF.7, DMF.14, DMF.16 Ligand excluded by PLIP DMF.18: 1 residues within 4Å: Ligands: DMF.21 Ligand excluded by PLIP DMF.19: 4 residues within 4Å: Chain A: L.196, K.197, Y.198, K.199 Ligand excluded by PLIP DMF.20: 3 residues within 4Å: Chain A: Q.80, E.81, R.84 Ligand excluded by PLIP DMF.21: 4 residues within 4Å: Chain A: K.121, L.122, D.123 Ligands: DMF.18 Ligand excluded by PLIP DMF.22: 8 residues within 4Å: Chain A: W.132, F.143, W.240, C.319, A.320, L.321 Ligands: NTI.2, DMF.14 Ligand excluded by PLIP DMF.23: 5 residues within 4Å: Chain A: A.320, L.322, T.325, Y.330, F.332 Ligand excluded by PLIP DMF.24: 2 residues within 4Å: Chain A: W.316, R.317 Ligand excluded by PLIP DMF.25: 7 residues within 4Å: Chain A: K.42, S.43, P.44, P.45, Y.69, Q.70 Ligands: DMF.7 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, X. et al., Partial inhibition of aldose reductase by nitazoxanide and its molecular basis. Chemmedchem (2012)

Release Date

2012-08-29

Peptides

Aldose reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldose reductase

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