SMTL ID : 3v3c.1

Crystal Structure of Chloroplast ATP synthase c-ring from Pisum sativum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-14-mer

Ligands

1 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-functional Binders)

DGD.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

10 x YT3: YTTRIUM (III) ION(Non-covalent)(Non-functional Binders)

YT3.2: 1 residues within 4Å: Chain A: Q.40 No protein-ligand interaction detected (PLIP) YT3.6: 1 residues within 4Å: Chain C: V.79 No protein-ligand interaction detected (PLIP) YT3.7: 1 residues within 4Å: Chain D: V.79 No protein-ligand interaction detected (PLIP) YT3.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) YT3.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) YT3.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) YT3.16: 1 residues within 4Å: Chain H: E.42 No protein-ligand interaction detected (PLIP) YT3.20: 2 residues within 4Å: Chain K: Q.40, E.42 No protein-ligand interaction detected (PLIP) YT3.22: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) YT3.25: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

14 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: E.35 Chain B: E.35 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.35 NA.4: 2 residues within 4Å: Chain A: E.35 Chain N: E.35 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.35 NA.5: 2 residues within 4Å: Chain B: E.35 Chain C: E.35 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.35 NA.8: 2 residues within 4Å: Chain C: E.35 Chain D: E.35 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.35 NA.10: 2 residues within 4Å: Chain E: E.35 Chain F: E.35 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:E.35 NA.11: 2 residues within 4Å: Chain D: E.35 Chain E: E.35 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.35 NA.13: 2 residues within 4Å: Chain F: E.35 Chain G: E.35 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:E.35 NA.15: 1 residues within 4Å: Chain G: E.35 No protein-ligand interaction detected (PLIP) NA.17: 2 residues within 4Å: Chain H: E.35 Chain I: E.35 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:E.35 NA.18: 2 residues within 4Å: Chain I: E.35 Chain J: E.35 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:E.35 NA.19: 1 residues within 4Å: Chain J: E.35 No protein-ligand interaction detected (PLIP) NA.21: 2 residues within 4Å: Chain K: E.35 Chain L: E.35 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:E.35 NA.23: 2 residues within 4Å: Chain L: E.35 Chain M: E.35 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:E.35 NA.24: 2 residues within 4Å: Chain M: E.35 Chain N: E.35 1 PLIP interactions: 1 interactions with chain N Hydrogen bonds: N:E.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saroussi, S. et al., Structure and flexibility of the C-ring in the electromotor of rotary F(o)F(1)-ATPase of pea chloroplasts. Plos One (2012)

Release Date

2012-10-03

Peptides

ATP synthase subunit c, chloroplastic: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit c, chloroplastic