SMTL ID : 3v3n.1 (3 other biounits)

Crystal structure of TetX2 T280A: an adaptive mutant in complex with minocycline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x MIY: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE(Non-covalent)

MIY.1: 15 residues within 4Å: Chain A: Q.182, R.203, M.205, F.214, A.215, H.224, F.225, G.226, S.228, P.308, F.309, A.310, G.311, N.361 Ligands: FAD.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.214 Hydrogen bonds: A:D.51, A:Q.182, A:R.203, A:H.224, A:H.224, A:S.228

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: E.42, A.43, R.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.44 Salt bridges: A:R.44 SO4.3: 2 residues within 4Å: Chain A: R.127, K.146 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.127, A:K.146

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.4: 31 residues within 4Å: Chain A: I.12, G.13, G.14, G.15, P.16, V.17, Y.35, E.36, R.37, D.38, T.49, L.50, D.51, R.107, R.111, R.127, K.128, L.129, A.157, N.158, G.159, Q.182, L.277, G.300, D.301, P.308, G.311, Q.312, G.313, V.314 Ligands: MIY.1 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:L.277, A:P.308 Hydrogen bonds: A:G.14, A:G.14, A:V.17, A:R.37, A:R.37, A:D.38, A:D.51, A:R.107, A:R.107, A:R.111, A:L.129, A:L.129, A:N.158, A:D.301, A:V.314 Water bridges: A:G.15, A:G.159, A:D.301, A:G.311, A:G.313 pi-Cation interactions: A:R.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walkiewicz, K. et al., Crystal structure of TetX2 T280A: an adaptive mutant in complex with minocycline. To be Published

Release Date

2013-01-02

Peptides

TetX2 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TetX2 protein

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