SMTL ID : 3v4j.3 (2 other biounits)

First-In-Class Small Molecule Inhibitors of the Single-strand DNA Cytosine Deaminase APOBEC3G

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.71, H.73 Chain B: C.84, D.87 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.71, A:H.73, B:C.84 ZN.2: 4 residues within 4Å: Chain A: H.80, E.82, C.111, C.114 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.80, A:C.111, A:C.114 ZN.4: 4 residues within 4Å: Chain A: C.84, D.87 Chain B: H.71, H.73 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:H.71, B:H.73, A:C.84 ZN.5: 4 residues within 4Å: Chain B: H.80, E.82, C.111, C.114 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.80, B:C.111, B:C.114

2 x PQR: 4-[methyl(nitroso)amino]benzene-1,2-diol(Covalent)

PQR.3: 5 residues within 4Å: Chain A: R.101, T.103, C.131, K.133, K.157 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.103, A:T.103, A:K.133 pi-Cation interactions: A:R.101 PQR.6: 7 residues within 4Å: Chain B: R.101, S.129, L.130, C.131, K.133, G.155, K.157 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.133, B:K.133, B:K.157 Water bridges: B:K.157, B:K.157 pi-Cation interactions: B:R.101, B:K.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., First-In-Class Small Molecule Inhibitors of the Single-Strand DNA Cytosine Deaminase APOBEC3G. Acs Chem.Biol. (2012)

Release Date

2012-02-01

Peptides

DNA dC->dU-editing enzyme APOBEC-3G: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA dC->dU-editing enzyme APOBEC-3G

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