- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.38 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: E.32, H.190
6 PLIP interactions:2 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:E.32, A:H.190, H2O.2, H2O.2, H2O.9, H2O.9
MG.6: 3 residues within 4Å:- Chain B: E.32, P.33, H.190
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:H.190, H2O.12, H2O.13, H2O.15, H2O.17
MG.10: 2 residues within 4Å:- Chain C: E.32, H.190
6 PLIP interactions:2 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:E.32, C:H.190, H2O.21, H2O.21, H2O.28, H2O.28
MG.14: 4 residues within 4Å:- Chain A: R.197
- Chain D: E.32, P.33, H.190
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:H.190, H2O.31, H2O.32, H2O.34, H2O.36
- 8 x ZN: ZINC ION(Non-covalent)
ZN.3: 2 residues within 4Å:- Chain A: H.71, H.73
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.71, A:H.73, H2O.9
ZN.4: 4 residues within 4Å:- Chain A: H.80, E.82, C.111, C.114
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.80, A:C.111, A:C.114, H2O.2
ZN.7: 2 residues within 4Å:- Chain B: H.71, H.73
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.71, B:H.73, H2O.18
ZN.8: 4 residues within 4Å:- Chain B: H.80, E.82, C.111, C.114
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.80, B:C.111, B:C.114, H2O.13
ZN.11: 2 residues within 4Å:- Chain C: H.71, H.73
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:H.71, C:H.73, H2O.28
ZN.12: 4 residues within 4Å:- Chain C: H.80, E.82, C.111, C.114
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:H.80, C:C.111, C:C.114, H2O.21
ZN.15: 2 residues within 4Å:- Chain D: H.71, H.73
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:H.71, D:H.73, H2O.37
ZN.16: 4 residues within 4Å:- Chain D: H.80, E.82, C.111, C.114
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:H.80, D:C.111, D:C.114, H2O.32
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, M. et al., First-In-Class Small Molecule Inhibitors of the Single-Strand DNA Cytosine Deaminase APOBEC3G. Acs Chem.Biol. (2012)
- Release Date
- 2012-01-25
- Peptides
- DNA dC->dU-editing enzyme APOBEC-3G: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.38 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 8 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, M. et al., First-In-Class Small Molecule Inhibitors of the Single-Strand DNA Cytosine Deaminase APOBEC3G. Acs Chem.Biol. (2012)
- Release Date
- 2012-01-25
- Peptides
- DNA dC->dU-editing enzyme APOBEC-3G: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B