SMTL ID : 3v5v.1

UNLIGANDED E.CLOACAE C115D MURA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 11 residues within 4Å: Chain A: R.232, D.257, T.258, L.259, D.260, A.261, V.262, H.299, P.300, A.301, P.303 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.232, A:D.257, A:D.260, A:A.261, A:V.262 PEG.2: 4 residues within 4Å: Chain A: D.260, A.261, A.264, R.267 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.260, A:A.264, A:R.267 Water bridges: A:R.267 PEG.20: 10 residues within 4Å: Chain C: D.257, T.258, L.259, D.260, A.261, V.262, H.299, P.300, A.301, P.303 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.260, C:D.260, C:A.261, C:V.262 PEG.30: 5 residues within 4Å: Chain D: D.260, A.261, A.264, P.300 Ligands: ACT.29 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:R.187, D:D.260 Water bridges: D:D.260

33 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: E.183, N.184, D.211, R.212 Chain B: K.265, T.293, R.295 Ligand excluded by PLIP EDO.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain A: V.101, A.102, R.103, G.105, G.149, R.150 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain A: D.51, M.54, K.55, T.58 Ligand excluded by PLIP EDO.7: 8 residues within 4Å: Chain A: P.27, F.30, A.31, W.95, P.99, V.167, T.168, S.171 Ligand excluded by PLIP EDO.8: 7 residues within 4Å: Chain A: E.188, A.297, P.298, F.302, P.303, T.304, I.327 Ligand excluded by PLIP EDO.9: 8 residues within 4Å: Chain A: P.230, D.231, R.232, T.235, A.254, Q.255, T.258, L.259 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain A: E.15, A.408 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain B: E.40, Q.42, V.225 Ligand excluded by PLIP EDO.14: 2 residues within 4Å: Chain B: R.252, W.279 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain B: E.15, V.16, T.17, R.252 Ligand excluded by PLIP EDO.16: 8 residues within 4Å: Chain A: H.155, V.157, E.183, R.212 Chain B: A.291, V.292, T.293, T.320 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain B: G.153, A.154, H.155, T.179, I.181 Ligand excluded by PLIP EDO.18: 6 residues within 4Å: Chain B: E.188, R.232, H.299, P.303, T.304, D.305 Ligand excluded by PLIP EDO.19: 8 residues within 4Å: Chain B: P.230, D.231, R.232, T.235, A.254, Q.255, T.258, L.259 Ligand excluded by PLIP EDO.21: 6 residues within 4Å: Chain A: E.139 Chain C: E.135, I.136, K.137, K.144, S.146 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain C: R.295, A.301, F.302 Chain D: R.187 Ligands: EDO.23 Ligand excluded by PLIP EDO.23: 5 residues within 4Å: Chain C: D.260, A.261, A.264 Chain D: R.187 Ligands: EDO.22 Ligand excluded by PLIP EDO.24: 4 residues within 4Å: Chain C: A.92, I.94, W.95, G.164 Ligand excluded by PLIP EDO.25: 3 residues within 4Å: Chain C: D.49, T.89, M.90 Ligand excluded by PLIP EDO.26: 5 residues within 4Å: Chain C: K.204, I.205, S.206, T.214, E.216 Ligand excluded by PLIP EDO.27: 7 residues within 4Å: Chain A: L.138, E.139, E.140, G.141 Chain C: E.130, G.133, A.134 Ligand excluded by PLIP EDO.28: 4 residues within 4Å: Chain C: Q.7, P.9, T.10, N.412 Ligand excluded by PLIP EDO.31: 6 residues within 4Å: Chain D: A.21, K.22, N.23, E.190, D.231, I.233 Ligand excluded by PLIP EDO.32: 1 residues within 4Å: Chain D: K.55 Ligand excluded by PLIP EDO.33: 5 residues within 4Å: Chain D: E.15, V.16, T.17, K.405, A.408 Ligand excluded by PLIP EDO.34: 7 residues within 4Å: Chain D: P.27, F.30, A.31, W.95, P.99, V.167, S.171 Ligand excluded by PLIP EDO.35: 5 residues within 4Å: Chain D: S.206, G.207, R.212, I.213, T.214 Ligand excluded by PLIP EDO.36: 6 residues within 4Å: Chain D: N.43, R.227, V.228, L.229, P.230, N.253 Ligand excluded by PLIP EDO.37: 5 residues within 4Å: Chain D: E.188, A.297, F.302, P.303, T.304 Ligand excluded by PLIP EDO.38: 3 residues within 4Å: Chain D: G.14, E.15, A.408 Ligand excluded by PLIP EDO.39: 3 residues within 4Å: Chain D: P.9, T.10, S.245 Ligand excluded by PLIP EDO.40: 8 residues within 4Å: Chain D: L.229, P.230, D.231, R.232, T.235, A.254, Q.255, T.258 Ligand excluded by PLIP

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.11: 4 residues within 4Å: Chain A: N.79, F.80, S.81, Q.106 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.80 Water bridges: A:F.80, A:Q.106 ACT.29: 6 residues within 4Å: Chain C: R.187, T.210, D.211 Chain D: K.265, E.268 Ligands: PEG.30 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:D.211, C:D.211 Water bridges: C:R.187, D:K.265 Salt bridges: C:R.187, D:K.265

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.12: 8 residues within 4Å: Chain B: N.23, R.91, A.92, I.94, W.95, V.163, G.164, E.190 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.91, B:E.190 Water bridges: B:G.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.Y. et al., Functional Consequence of Covalent Reaction of Phosphoenolpyruvate with UDP-N-acetylglucosamine 1-Carboxyvinyltransferase (MurA). J.Biol.Chem. (2012)

Release Date

2012-03-07

Peptides

UDP-N-acetylglucosamine 1-carboxyvinyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

UDP-N-acetylglucosamine 1-carboxyvinyltransferase

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