SMTL ID : 3vab.1

Crystal structure of Diaminopimelate decarboxylase from Brucella melitensis bound to PLP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.197, R.201, E.245 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.245 Water bridges: A:R.197 Salt bridges: A:R.197, A:R.201

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: K.322, F.324, D.362, V.364, T.370, Y.373, L.376 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.322, A:D.362, A:D.362, A:T.370 EDO.3: 7 residues within 4Å: Chain A: T.404, Y.405, S.407, L.433 Chain B: S.85, R.110, V.400 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.110, B:V.400, A:S.407, A:S.407 Water bridges: A:T.404 EDO.4: 7 residues within 4Å: Chain A: S.85, R.110, V.400, R.425 Chain B: T.404, S.407, L.433 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:R.110, A:R.425, B:S.407, B:S.407 Water bridges: A:V.400, B:T.404, B:T.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of Diaminopimelate decarboxylase from Brucella melitensis bound to PLP. To be Published

Release Date

2012-01-18

Peptides

Diaminopimelate decarboxylase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Diaminopimelate decarboxylase 1