- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x DU- DU- DU- BRU- DU- DU: DNA (5'-D(*C*UP*UP*UP*(BRU)P*UP*U)-3')(Non-covalent)
- 4 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
DIO.5: 6 residues within 4Å:- Chain A: P.2, L.3, A.6, Y.90, Q.91, P.92
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Q.91
DIO.8: 3 residues within 4Å:- Chain B: R.32, P.40, G.41
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.41
- Water bridges: B:R.32
DIO.11: 6 residues within 4Å:- Chain C: P.2, L.3, A.6, Y.90, Q.91, L.93
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Y.90
DIO.15: 3 residues within 4Å:- Chain D: R.32, P.40, G.41
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.41
- 11 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 3 residues within 4Å:- Chain A: K.83, R.85, D.147
3 PLIP interactions:3 interactions with chain A- Water bridges: A:R.85
- Salt bridges: A:K.83, A:R.85
SO4.7: 4 residues within 4Å:- Chain A: T.67, M.70, R.86, Y.90
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.90
- Salt bridges: A:R.86
SO4.9: 3 residues within 4Å:- Chain B: M.70, R.86, Y.90
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.90, B:Y.90
- Water bridges: B:R.86
- Salt bridges: B:R.86
SO4.10: 2 residues within 4Å:- Chain B: S.62, V.63
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:V.63
SO4.12: 2 residues within 4Å:- Chain C: K.83, R.85
2 PLIP interactions:2 interactions with chain C- Salt bridges: C:K.83, C:R.85
SO4.13: 3 residues within 4Å:- Chain C: R.7, R.8, E.59
4 PLIP interactions:4 interactions with chain C- Water bridges: C:R.7, C:R.7
- Salt bridges: C:R.7, C:R.8
SO4.14: 4 residues within 4Å:- Chain C: T.67, M.70, R.86, I.148
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.86
SO4.16: 4 residues within 4Å:- Chain D: R.7, R.61, S.62, V.63
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:V.63
SO4.17: 3 residues within 4Å:- Chain D: M.70, R.86, Y.90
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:R.86
SO4.18: 2 residues within 4Å:- Chain D: K.83, R.85
3 PLIP interactions:3 interactions with chain D- Water bridges: D:K.83
- Salt bridges: D:K.83, D:R.85
SO4.19: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jenkins, J.L. et al., U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res. (2013)
- Release Date
- 2013-02-13
- Peptides
- Splicing factor U2AF 65 kDa subunit: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
DD
I
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x DU- DU- DU- BRU- DU- DU: DNA (5'-D(*C*UP*UP*UP*(BRU)P*UP*U)-3')(Non-covalent)
- 4 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
- 11 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jenkins, J.L. et al., U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res. (2013)
- Release Date
- 2013-02-13
- Peptides
- Splicing factor U2AF 65 kDa subunit: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
DD
I