SMTL ID : 3vav.1

Crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase from Burkholderia thailandensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-10-mer

Ligands

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: D.75, D.76, Y.79 Chain F: Y.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.76, A:D.76 EDO.2: 4 residues within 4Å: Chain B: Y.79, A.82, R.86 Chain G: Q.64 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain B Hydrogen bonds: G:Q.64, B:R.86, B:R.86 Water bridges: G:Q.66 EDO.3: 6 residues within 4Å: Chain C: T.35, L.54, K.124, H.148, V.224, V.226 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.124, C:H.148 EDO.4: 4 residues within 4Å: Chain D: Y.79, A.82, R.86 Chain I: Q.64 4 PLIP interactions: 2 interactions with chain I, 2 interactions with chain D Hydrogen bonds: I:Q.64, D:R.86, D:R.86 Water bridges: I:Q.66 EDO.5: 6 residues within 4Å: Chain E: T.35, L.54, K.124, H.148, I.214, V.226 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:K.124, E:K.124 EDO.6: 5 residues within 4Å: Chain B: Q.64 Chain G: Y.79, A.82, C.83, R.86 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain B Hydrogen bonds: G:R.86, G:R.86, B:Q.64 Water bridges: B:Q.66 EDO.7: 4 residues within 4Å: Chain G: L.54, K.124, H.148, V.226 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:K.124, G:K.124 EDO.8: 5 residues within 4Å: Chain C: Q.64 Chain H: Y.79, A.82, C.83, R.86 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain H Hydrogen bonds: C:Q.64, C:Q.66, H:R.86, H:R.86 EDO.9: 5 residues within 4Å: Chain I: T.35, K.124, H.148, I.214, V.226 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:K.124, I:H.148 EDO.11: 4 residues within 4Å: Chain E: Q.64 Chain J: Y.79, A.82, R.86 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain E Hydrogen bonds: J:R.86, J:R.86, E:Q.64 Water bridges: E:Q.66 EDO.12: 5 residues within 4Å: Chain J: L.54, K.124, H.148, I.214, V.226 4 PLIP interactions: 4 interactions with chain J Hydrogen bonds: J:S.58, J:S.58, J:K.124, J:K.124

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 2 residues within 4Å: Chain D: Y.79 Chain I: Y.79 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)

Release Date

2012-01-18

Peptides

3-methyl-2-oxobutanoate hydroxymethyltransferase: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

3-methyl-2-oxobutanoate hydroxymethyltransferase