SMTL ID : 3vay.1

Crystal structure of 2-Haloacid Dehalogenase from Pseudomonas syringae pv. Tomato DC3000

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.8, D.10, D.180 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.10, A:D.180, H2O.1, H2O.1, H2O.1 MG.6: 4 residues within 4Å: Chain B: D.8, D.10, D.180, D.185 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.10, B:D.180, H2O.7, H2O.7, H2O.7

15 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 1 residues within 4Å: Chain A: N.130 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: Q.111, G.137, L.138 Ligand excluded by PLIP IOD.4: 4 residues within 4Å: Chain A: R.50, L.54, K.61, L.67 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: R.50, R.68 Ligands: IOD.7 Ligand excluded by PLIP IOD.7: 4 residues within 4Å: Chain A: L.46, R.50 Chain B: W.47 Ligands: IOD.5 Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain B: R.50, R.68 Ligands: IOD.11 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain B: R.68, N.130 Ligand excluded by PLIP IOD.10: 1 residues within 4Å: Chain B: R.167 Ligand excluded by PLIP IOD.11: 4 residues within 4Å: Chain B: L.46, R.50, R.68 Ligands: IOD.8 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Chain B: T.122 Ligand excluded by PLIP IOD.13: 5 residues within 4Å: Chain A: W.47 Chain B: R.50, L.54, K.61, L.67 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain B: L.151, R.167 Ligand excluded by PLIP IOD.15: 1 residues within 4Å: Chain B: K.169 Ligand excluded by PLIP IOD.16: 3 residues within 4Å: Chain B: V.170, D.171, A.174 Ligand excluded by PLIP IOD.17: 2 residues within 4Å: Chain B: I.116, P.223 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hou, Z. et al., Structure of 2-haloacid dehalogenase from Pseudomonas syringae pv. tomato DC3000. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-01-02

Peptides

HAD-superfamily hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HAD-superfamily hydrolase