SMTL ID : 3vaz.2 (2 other biounits)

Crystal structure of Staphylococcal GAPDH1 in a hexagonal space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.19 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 19 residues within 4Å: Chain A: G.17, F.18, G.19, R.20, I.21, N.41, D.42, L.43, P.86, C.104, T.105, G.106, F.107, S.128, A.129, C.159, N.324, E.325, Y.328 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.21, A:Y.328 Hydrogen bonds: A:F.18, A:R.20, A:I.21, A:P.86 Water bridges: A:G.190 NAD.2: 21 residues within 4Å: Chain B: N.16, G.17, F.18, G.19, R.20, I.21, N.41, D.42, L.43, P.86, C.104, T.105, G.106, F.107, S.128, A.129, C.159, T.189, N.324, E.325, Y.328 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:I.21, B:Y.328 Hydrogen bonds: B:G.17, B:F.18, B:R.20, B:I.21, B:N.41, B:P.86 Water bridges: B:N.16, B:G.19, B:Y.108, B:G.190, B:G.190, B:G.190, B:G.190, B:G.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roychowdhury, A. et al., Crystal structure of Staphylococcal GAPDH1 in a hexagonal space group. To be Published

Release Date

2013-01-02

Peptides

Glyceraldehyde-3-phosphate dehydrogenase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
Q

Glyceraldehyde-3-phosphate dehydrogenase 1

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