SMTL ID : 3vbb.1 (2 other biounits)

Crystal Structure of Seryl-tRNA Synthetase from Human at 2.9 angstroms

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: R.302, F.316, V.318, F.321 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain B: E.391 No protein-ligand interaction detected (PLIP)

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: H.170, T.312, G.314, R.317 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.192, A:G.314, A:R.317 Salt bridges: A:H.170 PO4.4: 4 residues within 4Å: Chain B: R.192, G.309, T.312, R.317 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.192, B:G.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Unique domain appended to vertebrate tRNA synthetase is essential for vascular development. Nat Commun (2012)

Release Date

2012-02-29

Peptides

Seryl-tRNA synthetase, cytoplasmic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Seryl-tRNA synthetase, cytoplasmic

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