SMTL ID : 3vbb.1 (2 other biounits)

Crystal Structure of Seryl-tRNA Synthetase from Human at 2.9 angstroms

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: R.302, F.316, V.318, F.321 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain B: E.391 No protein-ligand interaction detected (PLIP)

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: H.170, T.312, G.314, R.317 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.192, A:G.314, A:R.317 Salt bridges: A:H.170 PO4.4: 4 residues within 4Å: Chain B: R.192, G.309, T.312, R.317 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.192, B:G.309

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Unique domain appended to vertebrate tRNA synthetase is essential for vascular development. Nat Commun (2012)

Release Date

2012-02-29

Peptides

Seryl-tRNA synthetase, cytoplasmic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Seryl-tRNA synthetase, cytoplasmic

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