SMTL ID : 3vbg.2 (1 other biounit)

Structure of hDM2 with Dimer Inducing Indolyl Hydantoin RO-2443

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x 03M: (5Z)-5-[(6-chloro-7-methyl-1H-indol-3-yl)methylidene]-3-(3,4-difluorobenzyl)imidazolidine-2,4-dione(Non-covalent)

03M.1: 16 residues within 4Å: Chain A: G.34, I.37, M.38, Y.43, E.45, Q.48, V.69 Chain B: L.30, L.33, G.34, I.37, Q.48, F.67, V.69, I.75 Ligands: 03M.2 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:I.37, A:M.38, A:Y.43, A:V.69, B:L.33, B:V.69 Hydrogen bonds: A:Y.43, A:Q.48, A:Q.48 pi-Stacking: A:Y.43 03M.2: 14 residues within 4Å: Chain A: L.30, L.33, F.67, V.69, I.75 Chain B: G.34, I.37, M.38, R.41, Y.43, Q.48, V.51, V.69 Ligands: 03M.1 12 PLIP interactions: 9 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.43, B:V.51, B:V.69, A:L.30, A:L.33, A:V.69 Hydrogen bonds: B:R.41, B:R.41, B:Y.43, B:Q.48, B:Q.48 pi-Stacking: B:Y.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Graves, B. et al., Activation of the p53 pathway by small-molecule-induced MDM2 and MDMX dimerization. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-06-27

Peptides

E3 ubiquitin-protein ligase Mdm2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

E3 ubiquitin-protein ligase Mdm2

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