SMTL ID : 3vc4.1

Exploitation of hydrogen bonding constraints and flat hydrophobic energy landscapes in Pim-1 kinase needle screening and inhibitor design

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 7 residues within 4Å: Chain A: F.103, I.106, T.107, D.143, D.207, G.211, D.212 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.143 IMD.3: 6 residues within 4Å: Chain A: F.22, E.144, N.145, I.158, D.159 Ligands: 0FS.2 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.145 pi-Stacking: A:F.22

1 x 0FS: (5Z)-5-[3-(trifluoromethyl)benzylidene]-1,3-thiazolidine-2,4-dione(Non-covalent)

0FS.2: 14 residues within 4Å: Chain A: L.17, F.22, V.25, A.38, K.40, I.77, L.93, E.94, R.95, V.99, L.147, I.158, D.159 Ligands: IMD.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.17, A:V.25, A:V.25, A:L.147 Hydrogen bonds: A:K.40, A:D.159 Water bridges: A:K.40, A:F.160 Halogen bonds: A:E.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Good, A.C. et al., Implications of promiscuous Pim-1 kinase fragment inhibitor hydrophobic interactions for fragment-based drug design. J.Med.Chem. (2012)

Release Date

2012-03-21

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase pim-1

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