SMTL ID : 3vcp.1

The 2.2 Angstrom structure of Stc2 with proline bound in the active site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.1: 8 residues within 4Å: Chain A: C.86, H.88, R.89, C.106, Y.108, H.109, Q.110, W.111 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.86, A:H.88, A:C.106, A:H.109 FES.4: 8 residues within 4Å: Chain B: C.86, H.88, R.89, C.106, Y.108, H.109, Q.110, W.111 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.86, B:H.88, B:C.106, B:H.109 FES.7: 8 residues within 4Å: Chain C: C.86, H.88, R.89, C.106, Y.108, H.109, Q.110, W.111 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.86, C:H.88, C:C.106, C:H.109

3 x FE: FE (III) ION(Non-covalent)

FE.2: 5 residues within 4Å: Chain A: N.198, H.204, H.209, D.360 Ligands: PRO.3 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Metal complexes: A:H.204, A:H.209, A:D.360, PRO.3, H2O.6 FE.5: 5 residues within 4Å: Chain B: N.198, H.204, H.209, D.360 Ligands: PRO.6 5 PLIP interactions: 3 interactions with chain B, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Metal complexes: B:H.204, B:H.209, B:D.360, PRO.6, H2O.12 FE.8: 5 residues within 4Å: Chain C: N.198, H.204, H.209, D.360 Ligands: PRO.9 5 PLIP interactions: 1 Ligand-Ligand interactions, 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: PRO.9, C:H.204, C:H.209, C:D.360, H2O.18

3 x PRO: PROLINE(Non-covalent)

PRO.3: 13 residues within 4Å: Chain A: N.198, N.199, E.201, C.202, H.204, C.205, H.209, L.212, A.223, W.353, T.356, D.360 Ligands: FE.2 8 PLIP interactions: 6 interactions with chain A, 2 Ligand-Ligand interactions Hydrophobic interactions: A:A.223, A:W.353 Water bridges: A:N.198, A:N.199 Salt bridges: A:H.204, A:H.209 Hydrogen bonds: P.3, P.3 PRO.6: 13 residues within 4Å: Chain B: N.198, N.199, E.201, C.202, H.204, C.205, H.209, L.212, A.223, W.353, T.356, D.360 Ligands: FE.5 8 PLIP interactions: 6 interactions with chain B, 2 Ligand-Ligand interactions Hydrophobic interactions: B:A.223, B:W.353 Water bridges: B:N.198, B:N.199 Salt bridges: B:H.204, B:H.209 Hydrogen bonds: P.6, P.6 PRO.9: 13 residues within 4Å: Chain C: N.198, N.199, E.201, C.202, H.204, C.205, H.209, L.212, A.223, W.353, T.356, D.360 Ligands: FE.8 8 PLIP interactions: 6 interactions with chain C, 2 Ligand-Ligand interactions Hydrophobic interactions: C:A.223, C:W.353 Water bridges: C:N.198, C:N.199 Salt bridges: C:H.204, C:H.209 Hydrogen bonds: P.9, P.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Daughtry, K.D. et al., Quaternary Ammonium Oxidative Demethylation: X-ray Crystallographic, Resonance Raman, and UV-Visible Spectroscopic Analysis of a Rieske-Type Demethylase. J.Am.Chem.Soc. (2012)

Release Date

2012-02-08

Peptides

Ring-hydroxylating dioxygenase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Ring-hydroxylating dioxygenase

Related Entries With Identical Sequence