SMTL ID : 3vcy.3 (4 other biounits)

Structure of MurA (UDP-N-acetylglucosamine enolpyruvyl transferase), from Vibrio fischeri in complex with substrate UDP-N-acetylglucosamine and the drug fosfomycin.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)

UD1.1: 21 residues within 4Å: Chain A: K.23, N.24, W.96, A.120, R.121, P.122, V.123, D.124, L.125, H.126, V.162, S.163, V.164, G.165, T.305, D.306, I.328, F.329, R.332 Ligands: PO4.2, GOL.4 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:W.96 Hydrogen bonds: A:K.23, A:K.23, A:N.24, A:D.124, A:L.125, A:H.126, A:S.163, A:V.164, A:G.165, A:D.306, A:R.332 Water bridges: A:R.92, A:A.120, A:R.121, A:R.121, A:S.163, A:S.163, A:E.189, A:E.189, A:H.300, A:T.305, A:T.305, A:I.328, A:R.372 Salt bridges: A:R.121

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: K.23, R.92, R.121, R.398 Ligands: UD1.1, FFQ.3, GOL.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.398 Water bridges: A:K.23, A:K.23, A:D.50 Salt bridges: A:K.23, A:R.121

1 x FFQ: [(1R)-1-hydroxypropyl]phosphonic acid(Covalent)

FFQ.3: 6 residues within 4Å: Chain A: R.92, G.115, C.116, R.121, R.398 Ligands: PO4.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.121, A:R.398, A:R.398 Water bridges: A:T.369, A:L.371

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: R.92, A.93, I.95, W.96, R.121, H.126, G.165 Ligands: UD1.1, PO4.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.92, A:R.121, A:H.126 Water bridges: A:R.92, A:R.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bensen, D.C. et al., Structure of MurA (UDP-N-acetylglucosamine enolpyruvyl transferase) from Vibrio fischeri in complex with substrate UDP-N-acetylglucosamine and the drug fosfomycin. Acta Crystallogr.,Sect.F (2012)

Release Date

2012-04-11

Peptides

UDP-N-acetylglucosamine 1-carboxyvinyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

UDP-N-acetylglucosamine 1-carboxyvinyltransferase

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