SMTL ID : 3vd8.1

Crystal structure of human AIM2 PYD domain with MBP fusion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-functional Binders)

GLC-GLC-GLC-GLC.1: 20 residues within 4Å: Chain A: N.13, D.15, K.16, K.43, E.45, E.46, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, Y.342, R.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.43, A:K.43, A:E.45, A:Y.342 Water bridges: A:R.345

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: A.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.142 EDO.3: 3 residues within 4Å: Chain A: Y.91, K.306, E.310 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.91, A:Y.91, A:E.310 EDO.4: 4 residues within 4Å: Chain A: N.387, I.388, T.389, E.392 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.392 EDO.5: 4 residues within 4Å: Chain A: E.309, A.313, A.319, M.322 No protein-ligand interaction detected (PLIP)

4 x K: POTASSIUM ION(Non-covalent)

K.6: 4 residues within 4Å: Chain A: I.236, D.237, S.239, V.241 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:I.236, A:S.239, A:V.241 K.7: 6 residues within 4Å: Chain A: T.129, E.131, T.250, F.251, K.252, G.253 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.131, A:T.250, H2O.10 K.8: 4 residues within 4Å: Chain A: L.148, M.149, H.204, M.205 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.148, A:H.204, H2O.6 K.9: 7 residues within 4Å: Chain A: D.66, R.67, G.69, G.70, N.333, I.334, P.335 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.66, A:I.334, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, T. et al., Structure of the Absent in Melanoma 2 (AIM2) Pyrin Domain Provides Insights into the Mechanisms of AIM2 Autoinhibition and Inflammasome Assembly. J.Biol.Chem. (2013)

Release Date

2013-01-16

Peptides

Maltose-binding periplasmic protein, Interferon-inducible protein AIM2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose-binding periplasmic protein, Interferon-inducible protein AIM2