SMTL ID : 3vdz.2 (1 other biounit)

Tailoring Encodable Lanthanide-Binding Tags as MRI Contrast Agents: xq-dSE3-Ubiquitin at 2.4 Angstroms

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x GD: GADOLINIUM ATOM(Non-covalent)

GD.1: 6 residues within 4Å: Chain A: D.6, D.8, D.10, S.12, D.14, E.17 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.8, A:D.10, A:S.12, A:E.17, A:E.17 GD.2: 5 residues within 4Å: Chain A: D.21, D.23, D.25, S.27, E.32 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.21, A:D.25, A:E.32, A:E.32, H2O.1

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: K.62, Q.76, R.77, D.87, R.107 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.76 Salt bridges: A:K.62, A:R.77, A:R.107 SO4.4: 4 residues within 4Å: Chain A: R.107, L.108, R.109, G.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.108, A:G.110 Salt bridges: A:R.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Daughtry, K.D. et al., Tailoring encodable lanthanide-binding tags as MRI contrast agents. Chembiochem (2012)

Release Date

2012-11-28

Peptides

Ubiquitin-40S ribosomal protein S27a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ubiquitin-40S ribosomal protein S27a

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