SMTL ID : 3ven.1

Crystal structure of the O-carbamoyltransferase TobZ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

3 x K: POTASSIUM ION(Non-covalent)

K.1: 3 residues within 4Å: Chain A: T.571, K.572, D.573 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.571, H2O.2 K.2: 4 residues within 4Å: Chain A: L.328, T.329, R.330, V.333 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:L.328, A:R.330, A:V.333 K.3: 3 residues within 4Å: Chain A: E.248, R.249, Y.251 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.248, A:Y.251, H2O.27

1 x FE2: FE (II) ION(Non-covalent)

FE2.4: 4 residues within 4Å: Chain A: H.120, H.124, D.143, D.344 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.120, A:H.124, A:D.143, A:D.344, H2O.20

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: R.441, P.456, F.457, P.494, S.495, V.496, V.497, H.498 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.441, A:F.457, A:F.457, A:P.494, A:V.496

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.6: 6 residues within 4Å: Chain A: R.451, R.455, P.456, F.457, R.504, T.535 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.451, A:R.451, A:R.455, A:R.504 Salt bridges: A:K.449, A:R.451, A:R.455

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parthier, C. et al., The O-Carbamoyltransferase TobZ Catalyzes an Ancient Enzymatic Reaction. Angew.Chem.Int.Ed.Engl. (2012)

Release Date

2012-01-25

Peptides

O-carbamoyltransferase TobZ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O-carbamoyltransferase TobZ

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