SMTL ID : 3vev.1

Glucokinase in complex with an activator and glucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 15 residues within 4Å: Chain A: S.156, F.157, P.158, T.173, K.174, N.209, D.210, T.211, I.230, G.234, C.235, N.236, E.261, Q.292, E.295 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.173, A:K.174, A:N.209, A:N.209, A:C.235, A:N.236, A:E.261, A:E.261, A:Q.292 Water bridges: A:K.174, A:G.234 Salt bridges: A:K.174

1 x 0H4: (2S)-3-cyclopentyl-N-(5-methylpyridin-2-yl)-2-[2-oxo-4-(trifluoromethyl)pyridin-1(2H)-yl]propanamide(Non-covalent)

0H4.2: 17 residues within 4Å: Chain A: Y.66, V.67, R.68, S.69, P.71, I.164, M.215, I.216, Y.219, Y.220, C.225, E.226, M.240, L.456, V.457, V.460, A.461 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.67, A:R.68, A:P.71, A:I.164, A:I.216, A:Y.219, A:Y.219, A:V.460 Hydrogen bonds: A:R.68, A:R.68 pi-Stacking: A:Y.219

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: M.243, V.246, V.249, G.251 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S. et al., Insights into Mechanism of Glucokinase Activation: OBSERVATION OF MULTIPLE DISTINCT PROTEIN CONFORMATIONS. J.Biol.Chem. (2012)

Release Date

2012-02-08

Peptides

Glucokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase

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